PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P24410_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 91aa    MW: 9775.4 Da    PI: 8.4191
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P24410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.62.3e-14327125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggCr lLsYPr+A++V+Ca+C+tV
  GSMUA_Achr7P24410_001  3 CGGCRQLLSYPRNASYVQCASCQTV 27
                           ************************9 PP

2zf-LSD138.42e-124163123
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                           Cg C +lL+YP+GApsVRC++C 
  GSMUA_Achr7P24410_001 41 CGRCSVLLMYPYGAPSVRCSSCC 63
                           **********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.5E-15130IPR005735Zinc finger, LSD1-type
PfamPF069437.4E-12327IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-83966IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-114165IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MVCGGCRQLL SYPRNASYVQ CASCQTVNLV LEAHQVGNVK CGRCSVLLMY PYGAPSVRCS  60
SCCFITKIGE HNVRPPLSVQ QGQPPTGNPV C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410823.13e-62PREDICTED: regulator of G-protein signaling 3-like isoform X1
SwissprotO654262e-35LOL2_ARATH; Protein LOL2
TrEMBLM0TKC72e-60M0TKC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P24410_0016e-60(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.19e-37lsd one like 2